About Exposing the Big Game

Jim Robertson

Activists demand better protection for British wildlife

A woman wears foliage during the People’s Walk for Wildlife in central London, Saturday Sept. 22, 2018. (Dominic Lipinski/PA via AP)

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LONDON (AP) — The animals can’t protest so people in London did that for them.

Hundreds of marchers demanded better protection for British wildlife at the People’s Walk for Wildlife in Hyde Park on Saturday. Many carried pro-nature and pro-animal banners and placards and some wore animal masks.

Organizers said the march was to raise awareness about the threat to species and habitats across the United Kingdom.

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Natalie Bennett

@natalieben

@ChrisGPackham – “our wildlife needs us more than ever”. And the people today have turned out to show they are here for it.

Singer Billy Bragg implored the crowd to put the environment “back on the agenda” despite the Conservative government’s preoccupation with its Brexit divorce from the European Union.

Organizer Chris Packham has unveiled proposals to help Britain’s natural environment, including linking elementary schools to farms so children learn about food production. He has also called for an end to grouse shooting and dredging for scallops.

What Would Happen to All the Animals if Everyone Went Vegan?

Exposing the Big Game

Dr. Will Tuttle: Educator & Author
November 20, 2013

OneGreenPlanet

Those of us eating a plant-based diet often find our food choices causing more questions and consternation during the upcoming weeks than during the rest of the year. One of the perennial concerns I’ve found people have is that if everyone went vegan, what would happen to all the animals—chickens, turkeys, pigs, and cows? If we stopped eating them, wouldn’t they just take over the Earth, threatening our survival?

For years this question irked me because it seemed patently ridiculous, and worse, would be used to justify the cruelty of eating animal foods. Now, though, whenever I hear this question, I see it as an opportunity to deliver a brief meditation on how our world can be healed.

Imagining the world gradually going vegan is imagining the most positive possible future for our species, for the Earth, and for all…

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Climate Change Comes Home To Roost In North Carolina

Breached swine lagoons. Overflowing coal waste ponds. Sewage in the streets. The hellish aftermath of climate-fueled Hurricane Florence.
This image provided by Greenpeace shows a damaged structure on a hog farm surrounded by floodwaters in White Oak, North

JASON MICZEK/GREENPEACE
This image provided by Greenpeace shows a damaged structure on a hog farm surrounded by floodwaters in White Oak, North Carolina, after Hurricane Florence battered the area.

FAYETTEVILLE, N.C. — Florence’s rain came down in sheets ― unrelenting, and for days on end.

The water inundated homes, many still boarded up from Hurricane Matthew two years earlier. It swallowed farm operations, killing millions of chickens and turkeys and overflowing open pits full of hog feces. It flooded coal ash ponds, sending the toxic byproduct of burning coal into area waterways. The smell of human waste tainted neighborhoods; in the small town of Benson, 300,000 gallons of raw sewage spilled into the streets.

On Friday, Charlotte-based Duke Energy reported that a dam containing a lake at one of its power plants in Wilmington had been breached by floodwaters, potentially spilling coal ash from a nearby dump into the Cape Fear River.

Many parts of North Carolina are still unnavigable, with entire stretches of highway turned to rivers. Rural roads have been washed out.

From a bridge in east Fayetteville on Monday afternoon, residents watched as a plastic barrel, basketballs, fishing gear and a decapitated duck decoy floated down the swollen Cape Fear River toward the Atlantic Ocean, some 80 miles away. Along the bank, mattresses, a dog kennel, a frying pan and scores of garbage bobbed among the trees.

Mitch Colvin, the mayor of this inland city of more than 200,000, spoke with members of the media and law enforcement officials on the bridge Tuesday and marveled at the height of the river. By that point it had reached the bottom of a railroad bridge, causing trees and debris to pile up behind it.

Colvin told HuffPost he’s no expert on climate change, but the frequency and magnitude of recent storms have made it clear that “something has happened.”

“You know, this is our second 500-year storm in two years,” the 45-year-old mayor said as he leaned against the bridge’s concrete railing. “We need to reassess the classification of these storms. But we also need to plan as a community and as a region for how to prepare for this.”

In Fayetteville, Mayor Mitch Colvin stands atop the Person Street bridge on Tuesday, which spans the Cape Fear River.<i></i><

JOSEPH RUSHMORE FOR HUFFPOST
In Fayetteville, Mayor Mitch Colvin stands atop the Person Street bridge on Tuesday, which spans the Cape Fear River.

Hurricanes like Florence aren’t simply natural disasters ― they’re catastrophic events made worse by anthropogenic climate change, events that threaten human health and safety long after the storm has passed.

As it happened, industries that are among the biggest contributors to the climate crisis were some of the hardest hit in Florence’s aftermath.

Livestock production accounts for 14.5 percent of global human greenhouse gas emissions, according to the United Nations’ Food and Agriculture Organization. The Environmental Protection Agency estimates the agricultural sector, including livestock and crop production, is responsible for 9 percent of all carbon emissions in the United States.

North Carolina is the second-largest pork producing state in the country, behind Iowa. Nearly 9 million hogs are raised for slaughter on the state’s 2,100 hog farms, where the animals’ waste is dumped into massive open-air cesspools called lagoons.

By Friday, flooding had caused structural damage to at least six of the state’s 3,300 hog waste lagoons. Three of these damaged pits were breached and another 30 had overflowed, causing swine fecal matter to spill into and potentially contaminate the surrounding waterways with toxic hydrogen sulfide and ammonia.

One hog farmer in Duplin County reported the flooding resulted in a “total loss” of at least 2.2 million gallons of waste from a single lagoon, according to North Carolina’s Department of Environmental Quality.

“It’s yet another problem that is posed by this industrial model of production,” Waterkeeper Alliance attorney Will Hendrick told HuffPost. “It should be the case that we can produce food without putting our people in jeopardy.”

The North Carolina Pork Council has downplayed the significance of the lagoon overflow.

“While we are dismayed by the release of some liquids from some lagoons, we also understand that what has been released from the farms is the result of a once-in-a-lifetime storm and that the contents are highly diluted with rainwater,” the hog farm advocacy group said in a statement Wednesday.

This Sept. 17, 2018, photo shows flood waters from Hurricane Florence surround two hog houses and it's lagoon near Kinston, N

CASEY TOTH /THE NEWS OBSERVER VIA AP
This Sept. 17, 2018, photo shows flood waters from Hurricane Florence surround two hog houses and it’s lagoon near Kinston, North Carolina.

But the increasing frequency of severe weather events in the last few years due to climate change suggests Florence is in no way a “once-in-a-lifetime” storm. And since most of the state’s hog farms sit on coastal plains, and climate change is producing bigger, wetter storms, it’s likely these swirling cesspools of hog waste will continue to pose a threat to waterways and their surrounding communities for years to come.

“This industry has shown its vulnerabilities in terms of these weather events for decades and has still resisted the need for change,” Hendrick said. “They continue to prioritize profit over people who are affected by their operations.”

The storm has also wreaked havoc on North Carolina’s energy sector, causing coal ash containment ponds in at least two sites to swell. The ash, which is the residue left behind by burning coal, contains toxic elements like arsenic, mercury and lead and is often doused with water and left in containment ponds for years.

In 2017, coal accounted for 69 percent of all carbon emissions from the U.S. energy sector.

Duke Energy, one of the world’s largest utility companies, has 31 coal ash basins across North Carolina, holding 111 million tons of waste. It has decommissioned several of its coal power plants in the last few years, and earlier this month announced plans to shutter its remaining seven by 2048.

Many of those coal ash ponds are dangerously positioned next to rivers and lakes and are highly vulnerable to flooding in an event like Florence. Like hog waste lagoons, heavy rains can cause these coal ash landfills and ponds to overflow into waterways ― and Florence did just that, even as Duke downplayed the risk in advance of the storm.

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This image provided by Duke Energy shows Sutton Lake flowing into the Cape Fear River.&nbsp;

DUKE ENERGY
This image provided by Duke Energy shows Sutton Lake flowing into the Cape Fear River. 

Duke Energy reported last Saturday that 2,000 cubic yards of coal ash had poured into Sutton Lake from an adjacent coal ash pond. The lake, constructed by Duke Energy in 1972 as a cooling pond for its power plant, has also been designated as a recreational boating and fishing area by the state.

On Friday, the company said floodwaters breached a dam containing Sutton Lake and that it could not rule out that coal ash was flowing into the Cape Fear River.

Spillage from three inactive coal ash ponds was also reported at the H.F. Lee Plant in Goldsboro on Monday. Duke Energy said visual inspections suggested low-hanging vegetation allowed only “a small amount” of coal ash to be displaced. But Waterkeeper Alliance pushed back on the company’s assessment after visiting the site.

“Floating coal ash is clearly visible because flood waters have eroded the vegetative cover and are steadily washing ash downstream,” Donna Lisenby, global advocacy manager for Waterkeeper Alliance, shared in a Facebook post on Wednesday. “Duke Energy is falsely telling news reporters and the public that the tree cover on the ash ponds at Lee are preventing ash releases.”

Frank Holland, an attorney with the Southern Environmental Law Center, said this was an entirely unnecessary catastrophe that could have been prevented by evacuating the coal ash ponds and moving its contents uphill.

“Duke could have greatly reduced the risk to North Carolina and its rivers during Hurricane Florence if it had spent years removing the ash from these sites rather than spending years spending money on lawyers and lobbyists,” Holland said.

In 2014, a drainage pipe burst at a Duke Energy coal ash pond in Eden, North Carolina, causing 39,000 tons of the contaminant to flow into the Dan River. It was the third-largest such spill in U.S. history and resulted in Duke Energy pleading guilty to criminal negligence. The company agreed to pay $102 million in fines and restitution, the largest federal criminal fine in state history.

But Holland said Duke Energy has continued to drag its feet in cleaning up other coal ash basins, pushing back on demands from the state and environmental activists to evacuate its toxic ponds and landfills.

“This is a danger nobody should have to worry about,” Holland told HuffPost. “The only reason this ash is sitting in these unlined pits next to these rivers is because Duke Energy … made a choice to flush this ash downhill and create water pollution and a public safety hazard purely for their own convenience and to save some marginal dollars.”

Hurricanes Matthew and Florence have highlighted the urgency of removing coal ash from Duke Energy’s ponds as quickly as possible, Lisa Evans, an attorney for environmental advocacy group Earthjustice, told HuffPost.

“If the water level rises sufficiently ― and it doesn’t have to rise very much in [Sutton Lake] ― it’s going to flood the ponds that hold 2.1 million cubic yards of coal ash,” she said. “It’s a huge danger.”

Floodwaters fill the wooded area near the Duke Energy Sutton Steam Plant near Wilmington, North Carolina.

JOSEPH RUSHMORE FOR HUFFPOST
Floodwaters fill the wooded area near the Duke Energy Sutton Steam Plant near Wilmington, North Carolina.

The scientific community — including experts at the National Oceanic and Atmospheric Administration — has long warned that anthropogenic climate change influences extreme weather events. The 2015 National Climate Assessment concluded that “hurricane intensity and rainfall are projected to increase as the climate continues to warm.” Rainfall rates near the center of hurricanes are expected to increase by an average of 20 percent by the end of the century, according to the report.

Scientists have also revealed there’s been a marked slowdown in hurricanes’ speed over both water and land, which increases the risk of heavy rain, flooding and storm surges. And a 2016 study found that climate change has caused hurricanes in the North Atlantic to migrate farther north ― a trend that is expected to continue as temperatures rise.

Most scientists are careful not to attribute any single storm to our changing climate. But Florence, in many ways, exemplified hurricane behavior in a warming world.

The storm slammed into Wilmington, North Carolina, last Friday as a Category 1 hurricane, pushing storm surge up Pamlico Sound and into connecting rivers where it devastated cities like New Bern and Washington. The damage could have certainly been less extensive if not for sea level rise brought on by climate change. (In 2012, conservative North Carolina lawmakers chose to ignore the threat of sea level risepassing a bill that barred policymakers and developers from using up-to-date climate science to plan for rising waters on the state’s coast.)

Then the storm stalled over the Carolinas, taking a slow-motion route that reminded many experts of Hurricane Harvey, which dumped an estimated 24.5 trillion gallons of rain over southern Texas and Louisiana last year. Over a four-day period, Florence dumped as much as 35 inches of rain in some areas, breaking the state’s tropical cyclone rainfall record.

“There is simply more water filling these rivers because of the duration of these storms,” Evans said. “What we’re seeing ― what we saw in 2016 with Matthew and what we’re seeing right now with Florence ― is that this is having a tremendous impact on the storage of toxic waste in basins.”

“The injustice is that climate change was, in part, caused by these industries ― but who pays? It’s the communities whose drinking waters are contaminated and harmed by these spills,” she added. “It’s an unjust situation when these communities bear all the risk and all the harm.”

How the octopus got its smarts


Did the octopus evolve its unique intelligence by playing fast and free with the genetic code? Elizabeth Finkel investigates.


IAN CUMING / GETTY IMAGES

https://cosmosmagazine.com/biology/how-the-octopus-got-its-smarts

In 2008 the staff at Sea Star Aquarium in Coburg, Germany, had a mystery on their hands. Two mornings in a row, they had arrived at work to find the aquarium eerily silent: the entire electrical system had shorted out. Each time they would reset the system only to find the same eerie silence greeting them the next morning. So on the third night a couple of staff members kept vigil, taking turns to sleep on the floor.

Sure enough the perpetrator was apprehended: Otto, a six-month-old octopus.

He had crawled out of his tank and, using his siphon like a fire hose, aimed it at the overhead light. Apparently it annoyed him or maybe he was just bored. As director Elfriede Kummer told The Telegraph, “Otto is constantly craving for attention and always comes up with new stunts… Once we saw him juggling hermit crabs in his tank”.

Anecdotes of the mischievous intelligence of octopuses abound. Individuals have been reported to solve mazes, screw open child-proof medicine bottles and recognise individual people. Keepers are inclined to give them names because of their personalities.

Problem solving, tool use, planning, personality: these are hallmarks of the complex, flexible intelligence that we associate with back-boned animals, mostly mammals.

But a squishy octopus?

Some researchers who study the octopus and its smart cousins, the cuttlefish and squid, talk about a ‘second genesis of intelligence’ – a truly alien one that has little in common with the mammalian design.

While the octopus has a large central brain in its head, it also has a unique network of smaller ‘brains’ within each of its arms. It’s just what these creatures need to coordinate the mind-boggling complexity of eight prehensile arms and hundreds of sensitive suckers, which provide the octopus with the equivalent of opposable thumbs (roboticists have been taking note). Not to mention their ability to camouflage instantly on any of the diverse backgrounds they encounter on coral reefs or kelp forests. Using pixelated colours, texture and arm contortions, these body artists instantly melt into the seascape, only to reappear in a dazzling display to attract a mate or threaten a rival.

STEVEN TRAINOFF PHD / GETTY IMAGES

“They do things like clever animals even though they’re closely related to oysters,” says neuroscientist Clifton Ragsdale, at the University of Chicago. “What I want to know is how large brains can be organised not following the vertebrate plan.”

So how did evolution come up with this second genesis of intelligence or what film-maker Jacques Cousteau referred to as ‘soft intelligence’ back in the 1970s?

Cousteau inspired many a researcher to try and find answers. But it has been hard to advance beyond Technicolor screenshots and jaw-dropping tales – what zoologist Michael Kuba at Okinawa Institute of Science and Technology (OIST) refers to as “YouTube science”.

For decades the number of octopus researchers could be counted on one hand. They were poorly funded, and their valiant efforts were held in check by notoriously uncooperative subjects and inadequate tools. “You really had to be a fanatic,” says Kuba.

In the last few years, with more and more researchers lured to these enigmatic creatures, the field appears to have achieved critical mass. And these newcomers are the beneficiaries of some powerful new tools. In particular, since 2015 they’ve had the animals’ DNA blueprint, the genome, to pore over. It has offered some compelling clues.

Octopus are famous escape artists.

Octopus are famous escape artists.

CARLINA TETERIS / GETTY IMAGES

It turns out the octopus has a profusion of brain-forming genes previously seen only in back-boned animals. But its secret weapon may not be genes as we know them.

A complex brain needs a way to store complex information. Startlingly, the octopus may have achieved this complexity by playing fast and free with its genetic code.

To build a living organism, the decoding of the DNA blueprint normally proceeds with extreme fidelity. Indeed it’s known as ‘the central dogma’. A tiny section of the vast blueprint is copied, rather like photocopying a single page from a tome. That copy, called messenger RNA (mRNA), then instructs the production of a particular protein. The process is as precise as a three-hat chef following her prized recipe for apple pie down to the letter.

But in a spectacular example of dogma-breaking, the octopus chef takes her red pen and modifies copies of the recipe on the fly. Sometimes the result is the traditional golden crusted variety; other times it’s the deconstructed version – apple mush with crumbs on the side.

This recipe tweaking is known as ‘RNA editing’. In humans only a handful of brain protein recipes are edited. In the octopus, the majority get this treatment.

“It introduces a level of sophistication and complexity we never thought of. Perhaps it’s related to their memory,” says Eli Eisenberg, a computational biologist at the University of Tel Aviv. Though he quickly adds, “I must stress this is complete speculation”.

Jennifer Mather, who studies squid and octopus behaviour at the University of Lethbridge in Alberta, Canada, suggests it might go some way to explaining their distinct personalities.

Pigment filled sacs on octopus skin are called chromatophores.

Pigment filled sacs on octopus skin are called chromatophores.

JEAN LECOMTE / GETTY IMAGES

There’s no doubt that linking octopus intelligence to RNA editing is the realm of fringe science. The good news is it’s a testable hypothesis.

Researchers are now gearing up with state-of-the-art tools such as the gene-editing technology CRISPR, new types of brain recorders and rigorous behavioural tests to see whether RNA editing is indeed the key to octopus intelligence.

How did the octopus get so smart?

Some 400 million years ago, cephalopods – creatures named for the fact that their heads are joined to their feet – ruled the oceans. They feasted on shrimp and starfish, grew to enormous sizes like the six-metre long Nautiloid, Cameroceras, and used their spiral-shaped shells for protection and flotation.

Then the age of fishes dawned, dethroning cephalopods as the top predators. Most of the spiral-shelled species became extinct; modern nautilus was one of the few exceptions.

But one group shed or internalised their shells. Thus unencumbered, they were free to explore new ways to compete with the smarter, fleeter fish. They gave rise to the octopus, squid and cuttlefish – a group known as the coleoids.

Their innovations were dazzling. They split their molluscan foot, creating eight highly dexterous arms, each with hundreds of suckers as agile as opposable thumbs. To illustrate this dexterity, Mather relates the story of a colleague who found his octopus pulling out its stitches after surgery.

But those limber bodies were a tasty treat to fish predators, so the octopus evolved ‘thinking skin’ that could melt into the background in a fifth of a second. These quick-change artists not only use a palette of skin pigments to paint with, they also have a repertoire of smooth to spiky skin textures, as well as body and arm contortions to complete their performance – perhaps an imitation of a patch of algae, as they stealthily perambulate on two of their eight arms.

“It’s not orchestrated by simple reflexes,” says Roger Hanlon, who researches camouflage behaviour at the Marine Biological Laboratory in Woods Hole, Massachusetts. “It’s a context-specific, fast computation of decisions carried out in multiple levels of the brain.” And it depends critically on a pair of camera eyes with keen capabilities.

It takes serious computing power to control eight arms, hundreds of suckers, ‘thinking skin’ and camera eyes. Hence the oversized brain of the octopus. With its 500 million neurons, that’s two and a half times that of a rat. But their brain anatomy is very different.

A mammalian brain is a centralised processor that sends and receives signals via the spinal cord. But for the octopus, only 10% of its brain is centralised in a highly folded, 30-lobed donut-shaped structure arranged around its oesophagus (really). Two optic lobes account for another 30%, and 60% lies in the arms. “It’s a weird way to construct a complex brain,” says Hanlon. “Everything about this animal is goofy and weird.”

Take the arms: they’re considered to have their own ‘mini-brain’ not just because they are so packed with neurons but because they also have independent processing power. For instance, an octopus escaping a predator can detach an arm that will happily continue crawling around for up to 10 minutes.

Indeed, until an experiment by Kuba and colleagues in 2011, some suspected the arms’ movements were independentof their central brain. They aren’t. Rather it appears that the brain gives a high-level command that a staff of eight arms execute autonomously.

“The arm has some fascinating reflexes, but it doesn’t learn,” says Kuba, who studied these reflexes between 2009 and 2013 as part of a European Union project to design bio-inspired robots.

And then there’s their ‘thinking’ skin. Again the brain, primarily the optic lobes, controls the processing power here. The evidence comes from a 1988 study by Hanlon and John Messenger from the University of Sheffield. They showed that blinded newly hatched cuttlefish could no longer match their surroundings.

KELLY MURPHY ILLUSTRATION

They were still able to change colour and body patterns but in a seemingly random fashion. Anatomical evidence also shows that nerves in the lower brain connect directly to muscles surrounding the pigment sacs or chromatophores.

Like an artist spreading pigment on a pallet, activating the muscles pulls the sacs apart spreading the chromatophore pigments into thin discs of colour. But the octopus is not composing a picture. Hanlon’s experiments with cuttlefish show they are deploying one of three pre-existing patterns – uniform, mottled or disruptive – to achieve camouflage on diverse backgrounds.

As far as detailed brain circuitry goes, researchers have made little progress since the 1970s when legendary British neuroscientist J.Z Young worked out the gross anatomy of the distributed coleoid brain. Escaping Britain’s dismal winter for the Stazione Zoologica in balmy Naples, Young’s research was part of an American Air Force funded project to search for the theoretical memory circuit, the ‘engram’.

“They were ahead of their time,” says Hanlon, who experienced a stint with Young in Naples. Nevertheless they were limited by the paucity of brain-recording techniques that were suited to the octopus.

It’s a problem that has continued to hold back the understanding of how their brain circuits work. “Is it the same as the way mammals process information? We don’t know,” says Ragsdale.

Unwilling subjects

It’s not for want of trying, as Kuba will tell you. In the 1990s, he joined the lab of neuroscientist Binyamin Hochner at the Hebrew University of Jerusalem. Hochner was a graduate of Eric Kandel’s lab, the Nobel laureate who pioneered studies on how the sea slug Aplysia learns.

All the action takes place in the gaps between individual neurons, the ‘synapse’. The synapse may look like an empty gap under the microscope but it’s a crowded place. It’s packed with over 1,000 proteins that assemble into a pinpoint-size microprocessor. If each neuron is like a wire, it’s up to this microprocessor to decide whether the signal crosses over from one wire to the next. When the sea slug learns a lesson, for instance withdrawing its gill in response to a tail shock, that’s because new computations at the synapse rerouted the connections.

Kuba, however, found an octopus to be far less obliging than a sea slug. Whatever electrical probe he stuck into its brain was rapidly removed thanks to all those opposable thumbs. Ragsdale also had his share of frustration. “We have a technical problem with sharp electrodes. For example, if you put an electrode into the optic lobe, the neurons will fire for about 10 to 20 minutes and then become silent.”

Kuba, who is now based at the Okinawa Institute of Science and Technology, hopes that a new kind of miniature brain logger that sits on the surface of the brain, hopefully out of reach of prying suckers, will kick-start the era of octopus brain-circuit mapping.

“There’s a lot of technical challenges, but they are surmountable,” agrees Ragsdale.

The irony is that the first insights into how the vertebrate brain sends signals came from a squid. In 1934 Young identified a giant squid nerve cell that controlled the massive contractions of its mantle, the bulbous muscular sac behind the eyes that both houses the organs and squeezes water through the siphon with such great effect!

Like mammalian neurons, the most distinctive feature of the squid cell was its wire-like axon, but with a diameter of around one millimetre, it was 1,000 times fatter than those of mammals. The colossal size allowed researchers to insert a metal electrode and measure the changing electrical voltage as a nerve impulse travelled along the axon.

All this foundational knowledge shed light on vertebrate brains, but the detailed circuitry of the squid brain was largely left in the dark.

Octopus are body artists that use skin colour, texture and arm contortions for their disappearing acts.

Octopus are body artists that use skin colour, texture and arm contortions for their disappearing acts.

ULLSTEIN BILD / GETTY IMAGES

Breaking the central dogma

It was another frustrated neuroscientist who opened the latest front into the understanding of soft intelligence.

In the early 1990s, Josh Rosenthal, based at William Gilly’s lab at Stanford, was making use of the time-honoured giant squid motor axon. But with a new purpose. Rather than measure its electrical properties, Rosenthal wanted to isolate one of its key components: the ‘off’ switch. It is a protein called the potassium channel.

The squid neuron made this protein according to a recipe carried by its DNA blueprint, which is cached in the cell’s nucleus. To access the recipe, the cell makes a mRNA transcript, rather like transcribing a single recipe from a recipe book. Rosenthal wanted to isolate these transcripts and read the code sequence for the protein channels.

But he had a problem. Every time he read the sequence for the potassium channel, it was slightly different. Was it just an error? If so, it was highly consistent. The changes were not random. They always occurred at one or more precise positions in the code. And, invariably, the letter A was always changed to the letter G.

For instance, imagine a recipe for apple pie was supposed to read: Place the crust around the pie. Instead it was being edited to: Place the crust ground the pie. Such a change might instruct the modern-day deconstructed apple pie rather than the traditional crusted version.

Unbeknownst to Rosenthal, Peter Seeburg at the University of Heidelberg was puzzling over a similar glitch in a recipe for a human brain protein, the glutamate receptor. When Seeburg’s paper was published in 1991, Rosenthal recalls, “everyone got excited”.

Clearly editing brain recipes was important for humans and squid. But why?

In the human (or mouse), editing the glutamate receptor changed how much calcium could flow into brain cells. In mice, failure to edit was lethal, as it allowed toxic levels of calcium to stream in. There’s also evidence that failure to edit the same receptor in humans is associated with the neurodegenerative disease Amyotrophic Lateral Sclerosis.

An enzyme called ADAR2 carried out these crucial edits to the RNA recipe. Just why evolution hasn’t gone ahead and ‘fixed’ the DNA source code of the glutamate receptor remains a mystery.

As for the squid potassium channel, Rosenthal had a hunch. After an electrical signal has passed through a neuron, it needs a ‘reset’ for the next signal. The potassium channel plays a crucial part. In cold temperatures, the reset might take longer, making the animal a bit sluggish. Could RNA editing be a way of fine tuning the system in response to temperature? Rosenthal tested his idea by spending several years collecting octopuses that live in either tropical, temperate or polar climates. It was indeed the polar octopuses that were the most avid editors of their potassium channels.

Potassium channels turned out to be just the tip of the iceberg. Rosenthal teamed up with computation geek Eli Eisenberg at Tel Aviv University to trawl through mRNA databases and find out just how much recipe tweaking was going on with squid genes. In humans, tweaking is rare – restricted to a handful of brain gene recipes. In the squid, the majority of brain recipes received this treatment. Many of them were related to proteins found at the synapses, the microprocessors for memory and learning.

Could this extemporising with brain protein recipes be important for soft intelligence? It’s a tantalising idea. “Coleoids show it. Nautilus – the stupid cousin – does not, it’s like any other mollusc,” says Eisenberg.

“Coleoids are editing the same proteins that we know are involved in learning and memory. By editing them or not, it’s not a stretch to hypothesise that they are adding flexibility and complexity to the system,” says Rosenthal.

Cuttlefish have an impressive capacity to learn. These Australian giants are learning about the birds and the bees at Whyalla, South Australia.

Cuttlefish have an impressive capacity to learn. These Australian giants are learning about the birds and the bees at Whyalla, South Australia.

WILDESTANIMAL / GETTY IMAGES

Clues from the blueprint

Over in Chicago, Cliff Ragsdale, another frustrated octopus neuroscientist, was also turning his interest to octopus DNA.

In 2015, working with Daniel Rokhsar and Oleg Simakov of OIST, the Ragsdale laboratory managed to read the genome of the California two-spot octopus.

It turns out that the octopus has more genes that we do: 33,000 compared to our 21,000. But gene number per se doesn’t bear much relation to brain power: water fleas also have about 31,000. In fact most of the genes in the octopus catalogue were not all that different to those of its close relative – the limpet, a type of sea snail. But there were two gene families that stood out like a sore thumb. One was a family of genes called protocadherins. This family of ‘adhesion’ proteins are known to build brain circuits. Like labels on the tips of growing neurons, they allow the correct types of neurons to wire to each other — so neuron 370 connects up to neuron 471 at the right time and the right place. Limpets and oysters have between 17-25 types of protocadherins. Vertebrates have 70 types of protocadherins plus over 100 different types of related cadherins. These circuit builders have long been thought to be the key to vertebrate braininess.

So it was stunning to find that the octopus has a superfamily of 168 protocadherins. Ragsdale says the squid genome, also now being sequenced, shows it is similarly equipped with hundreds of circuit-building genes.

The other stand-out in the octopus genome was a family of genes called ‘zinc fingers’. They get their name because the encoded proteins have a chain structure that is cinched by zinc atoms into a series of fingers. These fingers poke into the coils of DNA to regulate the transcription of genes.

Limpets have about 413 of these zinc fingers. Humans have 764. Octopuses have 1,790! Perhaps this profusion of octopus zinc fingers is involved in regulating the network of brain genes?

COSMOS MAGAZINE

So far, the octopus has revealed three big clues as to how it generates brain complexity: it has multiplied its set of circuit-building protocadherin genes and its network-regulating zinc fingers. It has also unleashed RNA editing to generate more complexity on the fly.There may also be a fourth mechanism at work.

Genes are supposed to stay put. But ‘jumping genes’, which are closely related to viruses, have a tendency to up anchor and insert themselves into different sections of the DNA code. That can scramble or otherwise change its meaning. Imagine if the words ‘jumping gene’ just started appearing randomly in this text. Fred Gage’s group at the Salk Institute in San Diego has found that during the development of the nervous system in mice and humans, jumping genes start jumping.

What this means is that each individual brain cell ends up with slightly different versions of its DNA code. Gage speculates that this may be a way to generate diversity in the way neurons wire up. Perhaps it goes some way to explaining why twins, born with the same DNA, nevertheless end up with different behaviours.

“If you believe that theory,” says Ragsdale, “you’ll be struck by the fact that we also found a high number of jumping genes active in the brain tissues of the octopus.” Testing the theory

Unravelling the details of how octopus and squid are using and abusing the genetic code is generating iconoclastic hypotheses about how they generate their complex brain circuitry.

And researchers are not blind to the problems of dogma-breaking. For one thing, playing fast and free with the genetic code creates an astronomical number of possible proteins, most of which would be toxic to the animal, says Eisenberg. “It’s very troubling; one hypothesis is that this may explain their short lifespan of one to three years.”

Troubling or not, Rosenthal and colleagues at Woods Hole are moving full speed ahead to test the role of RNA editing in the coleoids by bringing together researchers with different expertise. “There’s a lot of moving pieces,” says Rosenthal.

For starters, their Woods Hole team is cultivating four species of small squid and cuttlefish that reach sexual maturity in two to three months. The goal is to manipulate the squid’s genes using the genetic engineering tool, CRISPR. To see if they can get CRISPR working, they will try to ‘knock-out’ the pigment genes. If they’re successful they should see the result on the squid bodies. “It’s a beautiful in-built test,” says Rosenthal.

If that works, they will try the big experiment. Does impairing the ability to edit proteins at the synapse (by knocking out the ADAR2 gene responsible for RNA editing) tamper with learning and memory?

Meanwhile, collaborator Alex Schnell, a behavioural biologist based at the University of Cambridge in the UK, is developing rigorous tests for complex learning and memory in cuttlefish. In particular, she is testing their capacity for “episodic memory”, a detailed weaving together of memories once thought to be a strictly human attribute.

For instance, it’s thanks to your episodic memory that you recall exactly where you were and what you were doing on 11 September 2001. Since the late 1990s, we know that animals like great apes, crows and jays also have that capacity. Maybe cuttlefish do too. Schnell’s initial results show that cuttlefish can learn and memorise complex information about their favourite food, such as when and where it is likely to be found.

With other teams around the world pursuing similar strategies, it seems likely that after decades of awe and wonder, the mystery of soft intelligence may soon yield to hard science.

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ELIZABETH FINKEL is editor-at-large of Cosmos.

Temperatures Possible This Century Could Melt Parts of East Antarctic Ice Sheet, Raise Sea Levels 10+ Feet

The Extinction Chronicles

A glacier flows towards East Antarctica. NASA Goddard Space Flight Center / CC BY 2.0

A section of the East Antarctic Ice Sheet that contains three to four meters (approximately 10 to 13 feet) of potential sea level rise could melt if temperatures rise to just two degrees above pre-industrial levels, a study published in Nature Wednesday found.

Researchers at Imperial College London, the University of Queensland, and other institutions in New Zealand, Japan and Spain looked at marine sediments to assess the behavior of the Wilkes Subglacial Basin during warmer periods of the Pleistocene and found evidence of melting when temperatures in Antarctica were at least two degrees Celsius above pre-industrial levels for periods of 2,500 years or more.

“With current global temperatures already one degree higher than during pre-industrial times, future ice loss seems inevitable if we fail to…

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Conservation Officer bitten by bear while releasing it from coyote trap

Committee to Abolish Sport Hunting Blog

A Conservation Officer with the DNR is recovering from a bear bite on the tip of one of his fingers after it was caught in a leghold coyote trap. File photo.

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CHIPPEWA COUNTY, Mich (WPBN/WGTU) — A Conservation Officer with the Department of Natural Resources is recovering from a bear bite on the tip of one of his fingers.

The officer was responding to the Kinross area on Sept. 17 to help release the approximately 100 pound black bear that was caught in a leghold coyote trap.

The trap was legally set and the DNR was called by the person who set the trap.

According to the report, the officer arrived on scene, assessed the situation and felt he would be able to safely release the bear back to the wild by utilizing a barricade to isolate the bear’s leg…

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Mangled raccoon caught in Vancouver-area trap sparks reward for information

Committee to Abolish Sport Hunting Blog

VANCOUVER—An animal rights organization wants to track down the person responsible for trapping a B.C. raccoon and mangling its leg so badly that it had to be put down.

The Association for the Protection of Fur-Bearing Animals is offering a $1,000 reward for any information about an incident the last week of August where a raccoon was found near Mount Leham in Abbotsford, with its leg caught in a trap. Critter Care Wildlife Society confirmed it treated a raccoon that had been caught in a trap in the Abbotsford area on Aug. 31, 2018.

Animal rights organizations argue leghold traps are an inhumane way of dealing with wildlife-human conflicts.
Animal rights organizations argue leghold traps are an inhumane way of dealing with wildlife-human conflicts.  (LOIC VENANCE / AFP/GETTY IMAGES)

Staff from Critter Care as well as Coastal Rivers Pet Hospital attempted to save the raccoon by amputating two of the racoon’s toes that had been…

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Big game hunter defends slaughter of endangered animals

Committee to Abolish Sport Hunting Blog

by Brad Hunter
Big game hunter Olivia Opre went on a British morning show to defend killing endangered animals. ITV THIS MORNING
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A big game hunter is defending her wanton slaughter as helping to preserve endangered animals.

American Olivia Opre, 41, told a British TV show she hunts so she can be close to nature. She’s killed more than 100 different species and had them stuffed.

“I think what it is, it’s bringing me to a place where I get to be a part of these wild places. And amongst the people of these areas, it’s the adventure, it’s the pursuit,” Opre told ITV This Morning.

“It’s something that pushes you to a limit you are not comfortable with and it takes you out of your comfort zone and for…

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Shell and Exxon’s secret 1980s climate change warnings

The Extinction Chronicles

Newly found documents from the 1980s show that fossil fuel companies privately predicted the global damage that would be caused by their products.

A Royal Dutch Shell logo.
 A Royal Dutch Shell logo. Photograph: Anna Gowthorpe/PA

One day in 1961, an American economist named Daniel Ellsberg stumbled across a piece of paper with apocalyptic implications. Ellsberg, who was advising the US government on its secret nuclear war plans, had discovered a document that contained an official estimate of the death toll in a preemptive “first strike” on China and the Soviet Union: 300 million in those countries, and double that globally.

Ellsberg was troubled that such a plan existed; years later, he tried to leak the details of nuclear annihilation to the public. Although his attempt failed, Ellsberg would become famous instead for leaking what came to be known as the Pentagon Papers – the US government’s secret history of…

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